| Rogers Marsh | Apache, AZ | 9.3 miles | NW |
| Jessie Spring Marsh | Apache, AZ | 11.6 miles | NW |
| Flanigan Cienega | Catron, NM | 12 miles | NE |
| Horseshoe Cienega | Greenlee, AZ | 12.7 miles | SW |
| Rosebud Cienega | Apache, AZ | 13.2 miles | NW |
| Race Horse Cienega | Apache, AZ | 17.3 miles | NW |
| Heron Marsh | Apache, AZ | 17.4 miles | NW |
| Wing Marsh | Apache, AZ | 17.6 miles | NW |
| Hulsey Cienega | Catron, NM | 17.6 miles | NE |
| Bear Cienega | Apache, AZ | 18.1 miles | SW |
| Upper Pacheta Cienega | Apache, AZ | 18.2 miles | NW |
| Winn Sink | Apache, AZ | 19.4 miles | NW |
| Purcell Cienega | Apache, AZ | 19.5 miles | NW |
| Butterfly Cienega | Apache, AZ | 22 miles | SW |
| Centerfire Bog | Catron, NM | 22.1 miles | NE |
| Bonito Rock Cienega | Apache, AZ | 22.9 miles | SW |
| Lofer Cienega | Apache, AZ | 26.7 miles | SW |
| Bear Cienega | Apache, AZ | 27 miles | NW |
| Sheep Cienega | Apache, AZ | 28.4 miles | NW |
| Beaver Dam | Apache, AZ | 29.1 miles | NW |
| Fitzgerald Cienega | Catron, NM | 31.2 miles | NE |
| Maverick Cienega | Apache, AZ | 31.8 miles | NW |
| The Cienega | Apache, AZ | 33.8 miles | NW |
| Badger Lake | Apache, AZ | 36.5 miles | NW |
| Woolsey Lake | Apache, AZ | 37.4 miles | NW |
| Jaques Marsh | Navajo, AZ | 51.7 miles | NW |
| Bosque Mojado | Navajo, AZ | 59.4 miles | NW |
| Redhead Marsh | Navajo, AZ | 60 miles | NW |
| Howard Cienega | Grant, NM | 65.9 miles | SE |
| Alexander Cienega | Sierra, NM | 78.8 miles | SE |
| Obed Meadow | Navajo, AZ | 100.3 miles | NW |
| Cooks Lake | Pinal, AZ | 109.8 miles | SW |
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