| Horseshoe Cienega | Greenlee, AZ | 13.1 miles | NW |
| Flanigan Cienega | Catron, NM | 22.5 miles | NE |
| Hulsey Cienega | Catron, NM | 22.6 miles | NE |
| Rogers Marsh | Apache, AZ | 26.3 miles | NW |
| Centerfire Bog | Catron, NM | 27.3 miles | NE |
| Bear Cienega | Apache, AZ | 28.1 miles | NW |
| Jessie Spring Marsh | Apache, AZ | 28.8 miles | NW |
| Race Horse Cienega | Apache, AZ | 28.8 miles | NW |
| Upper Pacheta Cienega | Apache, AZ | 30 miles | NW |
| Rosebud Cienega | Apache, AZ | 30.6 miles | NW |
| Butterfly Cienega | Apache, AZ | 31.2 miles | NW |
| Bonito Rock Cienega | Apache, AZ | 32.4 miles | NW |
| Purcell Cienega | Apache, AZ | 33.4 miles | NW |
| Wing Marsh | Apache, AZ | 34.1 miles | NW |
| Heron Marsh | Apache, AZ | 34.7 miles | NW |
| Winn Sink | Apache, AZ | 34.9 miles | NW |
| Fitzgerald Cienega | Catron, NM | 35.5 miles | NE |
| Lofer Cienega | Apache, AZ | 35.9 miles | NW |
| Bear Cienega | Apache, AZ | 41 miles | NW |
| Beaver Dam | Apache, AZ | 41.7 miles | NW |
| Sheep Cienega | Apache, AZ | 43.3 miles | NW |
| Maverick Cienega | Apache, AZ | 44.1 miles | NW |
| Badger Lake | Apache, AZ | 47.6 miles | NW |
| Howard Cienega | Grant, NM | 48.7 miles | SE |
| Woolsey Lake | Apache, AZ | 49.2 miles | NW |
| The Cienega | Apache, AZ | 51.2 miles | NW |
| Jaques Marsh | Navajo, AZ | 66 miles | NW |
| Alexander Cienega | Sierra, NM | 68.3 miles | SE |
| Bosque Mojado | Navajo, AZ | 74.2 miles | NW |
| Redhead Marsh | Navajo, AZ | 74.8 miles | NW |
| Cooks Lake | Pinal, AZ | 106.3 miles | SW |
| Obed Meadow | Navajo, AZ | 116.8 miles | NW |
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